PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID LPERR04G25100.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Leersia
Family MYB
Protein Properties Length: 310aa    MW: 31806 Da    PI: 5.2249
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
LPERR04G25100.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.67.8e-102270244
                     SSS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrw 44
                     g WT e ++ + +av+ lG +        W++Ia+ +  g+t+++++ ++
  LPERR04G25100.1 22 GVWTREQEKAFENAVATLGVDedeegdeMWEKIAEVVE-GKTAEEVRRHY 70
                     78************************************.**********9 PP

2Myb_DNA-binding39.71.1e-12138182347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
  LPERR04G25100.1 138 AWTEDEHRLFLLGLEKYGKGDWRSISRNFVISRTPTQVASHAQKY 182
                      6*****************************99************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.5031978IPR017884SANT domain
SMARTSM007175.9E-62076IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-42270IPR009057Homeodomain-like
PfamPF002496.4E-82270IPR001005SANT/Myb domain
CDDcd001671.65E-82470No hitNo description
SuperFamilySSF466892.3E-92480IPR009057Homeodomain-like
PROSITE profilePS5129416.605131187IPR017930Myb domain
SuperFamilySSF466892.08E-16133188IPR009057Homeodomain-like
SMARTSM007179.3E-11135185IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.9E-17135185IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.0E-10138181IPR009057Homeodomain-like
PfamPF002493.5E-11138182IPR001005SANT/Myb domain
CDDcd001673.51E-10138183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MAVEEASSSS GCEEGSGGGG GGVWTREQEK AFENAVATLG VDEDEEGDEM WEKIAEVVEG  60
KTAEEVRRHY GWLVEDVDGI ESGRVPLPVY ADGGGGAEEG SGGGGGKKGG GGGGGGGGHG  120
EKGSAAKSAE QERRKGIAWT EDEHRLFLLG LEKYGKGDWR SISRNFVISR TPTQVASHAQ  180
KYFIRLNSMN RERRRSSIHD ITSVNNGDAS GAQGPITGQA NGQAANPGKS SKQSPQPANA  240
PPGVDAYGTT IGQPVGGPLV SAVGTPVLPV PAAPHIAYGM HAPVPGAVVP GAPVNMPPMP  300
YPMPPPTSHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-141598281RADIALIS
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112GGKKGGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0686230.0AK068623.1 Oryza sativa Japonica Group cDNA clone:J013153N23, full insert sequence.
GenBankAK1061660.0AK106166.1 Oryza sativa Japonica Group cDNA clone:001-208-B07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636999.11e-154PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H71e-58DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D9WB580.0A0A0D9WB58_9ORYZ; Uncharacterized protein
STRINGORGLA04G0258700.11e-153(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63763854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.11e-80MYB family protein